As in other types of image, the absolute value of anisotropy is meaningful only when it is compared with images of the same type. The red channel was selected and linelength was set to 1. Nominal Plug physical object. Image-based multiscale modeling predicts tissue-level and network-level fiber reorganization in stretched cell-compacted collagen gels. Quantification and cluster analysis of actin cytoskeletal structures in plant cells: 
| Uploader: | Mirn |
| Date Added: | 15 March 2016 |
| File Size: | 33.66 Mb |
| Operating Systems: | Windows NT/2000/XP/2003/2003/7/8/10 MacOS 10/X |
| Downloads: | 46181 |
| Price: | Free* [*Free Regsitration Required] |
Re: FibrilTool ImageJ plug-in
KohlweinGerhard A. Topics Discussed in This Paper Region of interest: References Publications referenced by this paper.
Nominal Plug physical object. Other tools for the analysis of cell: Contribution of mechanical stress to cell division plane orientation at the shoot apical meristem of Arabidopsis thaliana Marion Louveaux. The tool fibriltiol the average orientation and anisotropy of fiber arrays in a given region of interest ROI in a few seconds.
FibrilTool
MicroFilament Analyzer, an image analysis tool for quantifying fibrillar orientation, reveals changes in microtubule fibrultool during gravitropism. Overview Measured variables orientation Operating system windows, mac, linux Licence open-source, freeware Automation level automated Plant requirements any Export formats csv, xls Other information.
TranquilloVictor H. The red channel was selected and linelength was set to 5. Quantitative mapping of collagen fiber orientation in non-glaucoma and glaucoma posterior human sclerae.
Measured variables orientation Operating system windows, mac, linux Licence open-source, freeware Automation level automated Plant requirements any Export formats csv, xls Other information.
Computational segmentation of collagen fibers in bone matrix indicates bone quality in ovariectomized rat spine Diaa Eldin S. Topics Discussed in This Paper Region of interest: Myosin activity drives actomyosin bundle formation and organization in contractile cells of the Caenorhabditis elegans spermatheca Alison C. An automated approach for three-dimensional quantification of fibrillar structures in optically cleared soft biological tissues.
Citations Ffibriltool citing this paper.
FibrilTool, an ImageJ plug-in to quantify fibrillar structures in raw microscopy images.
AFM topographic images height profile obtained with contact mode of onion epidermis cell wall observed from cytoplasmic side revealing sectors of relatively isotropic e and imagdj f topography.
Image-based multiscale modeling predicts tissue-level and network-level fiber reorganization in stretched cell-compacted collagen gels. Quantification of the temporal evolution of collagen orientation in mechanically conditioned engineered cardiovascular tissues.
Note the relatively low anisotropy, which can be related to the diffuse staining signal. Published in Nature Protocols SchrieflHeimo WolinskiP. The tool is ImageJ-based, and it is therefore freely accessible to the scientific community and does not require specific computational setup.
Description FibrilTool is an ImageJ plug-in based on the concept of nematic tensor, which can provide a quantitative description of the anisotropy of fiber arrays and their average orientation in cells, directly from raw images obtained by any form of microscopy. By clicking accept or continuing to use the site, you agree to the terms outlined in our Privacy PolicyTerms of Serviceand Dataset License.
Heat stress affects the cytoskeleton and the delivery of sucrose synthase in tobacco pollen tubes Luigi ParrottaClaudia FaleriMauro CrestiGiampiero Cai.
FibrilTool has been validated on microtubules, iimagej and cellulose microfibrils, but it may also help analyze other fibrillar structures, such as collagen, or the texture of various materials. By clicking accept or continuing to use the site, you agree to the terms outlined in our Privacy PolicyTerms of Serviceand Dataset License.
Citations Publications citing this paper. E A SanderVictor Imagwj. Computational segmentation of collagen fibers in bone matrix indicates bone quality in ovariectomized rat spine Diaa Eldin S. An automated approach for three-dimensional quantification of fibrillar structures in optically cleared soft biological tissues. Quantification and cluster analysis of actin cytoskeletal structures in plant cells: Image-based multiscale modeling predicts tissue-level and network-level fiber reorganization in stretched cell-compacted collagen gels.
Comments
Post a Comment